6VJT
Co-crystals of broadly neutralizing antibody with the linear epitope from Hepatitis B surface antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-08-03 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979180 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.848, 71.150, 134.704 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.352 - 1.782 |
R-factor | 0.1835 |
Rwork | 0.182 |
R-free | 0.22680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ggu |
Data reduction software | XDS (1.11.7) |
Data scaling software | XDS (0.5.32) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 134.700 | 134.700 | 1.820 |
High resolution limit [Å] | 1.780 | 9.090 | 1.780 |
Rmerge | 0.084 | 0.045 | 1.256 |
Rmeas | 0.088 | 0.048 | 1.310 |
Rpim | 0.025 | 0.014 | 0.366 |
Total number of observations | 598818 | 4697 | 28476 |
Number of reflections | 46432 | 438 | 2356 |
<I/σ(I)> | 17.2 | 47.3 | 1.3 |
Completeness [%] | 99.5 | 99.9 | 91 |
Redundancy | 12.9 | 10.7 | 12.1 |
CC(1/2) | 0.999 | 0.999 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 300 | Morpheus position E1 |