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6VDJ

Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate and NADH4.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 12.3.1
Synchrotron siteALS
Beamline12.3.1
Temperature [K]90
Detector technologyCCD
Collection date2019-10-16
DetectorADSC QUANTUM 315r
Wavelength(s)1.115866
Spacegroup nameP 31 2 1
Unit cell lengths84.695, 84.695, 196.007
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.790 - 2.000
R-factor0.2507
Rwork0.251
R-free0.26190
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4plg
RMSD bond length0.006
RMSD bond angle0.822
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17_3644)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7901.520
High resolution limit [Å]1.4301.430
Rmeas0.160383.600
Number of reflections146503105617
<I/σ(I)>5.02
Completeness [%]96.476.2
Redundancy8.842.94
CC(1/2)0.9900.009
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29320mg/mL protein, 2mM NADH4; well solution: 9% v/v 2-Propanol, 1.4M Ammonium Sulfate

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