6VDJ
Crystal structure of ancestral apicomplexan lactate dehydrogenase with sulfate and NADH4.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 12.3.1 |
Synchrotron site | ALS |
Beamline | 12.3.1 |
Temperature [K] | 90 |
Detector technology | CCD |
Collection date | 2019-10-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.115866 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 84.695, 84.695, 196.007 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.790 - 2.000 |
R-factor | 0.2507 |
Rwork | 0.251 |
R-free | 0.26190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4plg |
RMSD bond length | 0.006 |
RMSD bond angle | 0.822 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.790 | 1.520 |
High resolution limit [Å] | 1.430 | 1.430 |
Rmeas | 0.160 | 383.600 |
Number of reflections | 146503 | 105617 |
<I/σ(I)> | 5.02 | |
Completeness [%] | 96.4 | 76.2 |
Redundancy | 8.84 | 2.94 |
CC(1/2) | 0.990 | 0.009 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 20mg/mL protein, 2mM NADH4; well solution: 9% v/v 2-Propanol, 1.4M Ammonium Sulfate |