6V76
Crystal Structure of Human PKM2 in Complex with L-valine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2017-11-17 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000030 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.040, 154.980, 91.960 |
Unit cell angles | 90.00, 102.36, 90.00 |
Refinement procedure
Resolution | 61.440 - 2.750 |
R-factor | 0.2253 |
Rwork | 0.223 |
R-free | 0.26510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nu1 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.718 | 77.718 | 2.900 |
High resolution limit [Å] | 2.750 | 8.700 | 2.750 |
Rmerge | 0.028 | 0.564 | |
Rmeas | 0.098 | 0.032 | 0.671 |
Rpim | 0.036 | 0.012 | 0.251 |
Total number of observations | 416317 | 13618 | 59761 |
Number of reflections | 57593 | 1875 | 8407 |
<I/σ(I)> | 17.3 | 45.7 | 3.2 |
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 7.2 | 7.3 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M NaBr, 0.1 M Bis-Tris propane, 24% PEG 3350 |