6V6Y
Crystal Structure of T. thermophilus methylenetetrahydrofolate dehydrogenase (MTHFD)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.4587 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 121.357, 121.357, 59.620 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.422 - 2.152 |
R-factor | 0.214668092329 |
Rwork | 0.213 |
R-free | 0.24389 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3p2o |
RMSD bond length | 0.008 |
RMSD bond angle | 0.975 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.12-2829-000) |
Refinement software | PHENIX (1.12-2829-000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.420 | 2.229 |
High resolution limit [Å] | 2.152 | 2.152 |
Rmeas | 0.087 | 1.431 |
Number of reflections | 25688 | 1122 |
<I/σ(I)> | 19.87 | 0.85 |
Completeness [%] | 92.3 | 38.23 |
Redundancy | 8.53 | 2.96 |
CC(1/2) | 0.999 | 0.433 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 800 mM Potassium sodium tartrate, 100 mM HEPES buffer pH 7.5 |