6V2S
Crystal Structure of chromodomain of MPP8 in complex with inhibitor UNC3866
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-29 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.697, 51.043, 73.781 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.120 - 1.600 |
R-factor | 0.2099 |
Rwork | 0.208 |
R-free | 0.24260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3r93 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.303 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 24.590 | 24.590 | 1.600 |
High resolution limit [Å] | 1.570 | 8.620 | 1.570 |
Rmerge | 0.040 | 0.018 | 0.805 |
Rmeas | 0.044 | 0.020 | 0.873 |
Number of reflections | 20834 | 155 | 1002 |
<I/σ(I)> | 28.6 | 85.8 | 2.5 |
Completeness [%] | 99.6 | ||
Redundancy | 6.7 | 5.3 | 6.6 |
CC(1/2) | 1.000 | 1.000 | 0.831 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 30% PEG 4K, 0.2 M magnesium chloride, 0.1 M Tris hydrochloride |