6V1H
Crystal structure of the bromodomain of human BRD7 bound to bromosporine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 71.430, 109.020, 36.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.916 - 1.930 |
R-factor | 0.2027 |
Rwork | 0.201 |
R-free | 0.23460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ppa |
RMSD bond length | 0.010 |
RMSD bond angle | 1.003 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1-2575_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.916 | 19.916 | 1.980 |
High resolution limit [Å] | 1.930 | 8.630 | 1.930 |
Rmerge | 0.038 | 0.033 | 0.318 |
Rmeas | 0.042 | 0.039 | 0.352 |
Total number of observations | 61192 | ||
Number of reflections | 11158 | 132 | 788 |
<I/σ(I)> | 24.69 | 47.06 | 4.88 |
Completeness [%] | 99.4 | 83.5 | 99.7 |
Redundancy | 5.484 | 4.295 | 5.522 |
CC(1/2) | 0.999 | 0.997 | 0.960 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M (NH4)2SO4, 0.05 M Bis-tris (pH 6.5), and 30 % Pentaerythritol ethoxylate |