6V0K
Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.92 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 188.117, 188.117, 56.412 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 81.460 - 2.410 |
R-factor | 0.1851 |
Rwork | 0.183 |
R-free | 0.21910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q80 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.941 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.460 | 2.496 |
High resolution limit [Å] | 2.410 | 2.410 |
Rmerge | 0.093 | 0.341 |
Rpim | 0.093 | 0.341 |
Number of reflections | 44302 | 4386 |
<I/σ(I)> | 7.01 | 2.47 |
Completeness [%] | 99.8 | |
Redundancy | 2 | |
CC(1/2) | 0.989 | 0.496 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 7.5 mg/mL PvCPS, 0.1 M sodium citrate tribasic pH 5.7, 2% Tacsimate pH 5.0, 19% PEG-3350. (1:1) |