6UYG
Structure of Hepatitis C Virus Envelope Glycoprotein E2c3 core from genotype 6a bound to broadly neutralizing antibody AR3A and non neutralizing antibody E1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-25 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 209.824, 209.824, 139.942 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.600 - 3.375 |
R-factor | 0.2564 |
Rwork | 0.254 |
R-free | 0.30550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bkb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.548 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.460 |
High resolution limit [Å] | 3.375 | 3.400 |
Number of reflections | 25916 | 1258 |
<I/σ(I)> | 13.5 | |
Completeness [%] | 100.0 | |
Redundancy | 17.2 | |
CC(1/2) | 0.920 | 0.290 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M magnesium chloride, 10% (w/v) PEG 3000, 15% ethylene glycol, 0.1M Na-cacodylate, pH=6.5 |