6URM
Crystal structure of vaccine-elicited receptor-binding site targeting antibody LPAF-a.01 in complex with Hemagglutinin H1 A/California/04/2009
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-02-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.408, 260.836, 66.453 |
Unit cell angles | 90.00, 96.93, 90.00 |
Refinement procedure
Resolution | 40.063 - 2.650 |
R-factor | 0.2172 |
Rwork | 0.215 |
R-free | 0.26190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k9o |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.700 |
High resolution limit [Å] | 2.650 | 7.190 | 2.650 |
Rmerge | 0.174 | 0.076 | 0.733 |
Rmeas | 0.199 | 0.088 | 0.854 |
Rpim | 0.094 | 0.043 | 0.428 |
Number of reflections | 37436 | 1978 | 1422 |
<I/σ(I)> | 6.7 | ||
Completeness [%] | 90.8 | 94.2 | 71.8 |
Redundancy | 4.1 | 4.2 | 3.2 |
CC(1/2) | 0.989 | 0.561 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M (NH4)2SO4 and 23.57% w/v PEG 8000 |