6UBI
N123-VRC34.05 HIV neutralizing antibody in complex with HIV fusion peptide residue 512-519
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.933, 44.278, 125.375 |
Unit cell angles | 90.00, 96.20, 90.00 |
Refinement procedure
Resolution | 41.724 - 1.903 |
R-factor | 0.2394 |
Rwork | 0.237 |
R-free | 0.28840 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.165 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.160 | 1.900 |
Rmerge | 0.124 | 0.066 | 0.381 |
Rmeas | 0.146 | 0.079 | 0.458 |
Rpim | 0.077 | 0.042 | 0.251 |
Total number of observations | 229936 | ||
Number of reflections | 67167 | 3646 | 2709 |
<I/σ(I)> | 5.6 | ||
Completeness [%] | 96.4 | 98.9 | 78.4 |
Redundancy | 3.4 | 3.5 | 2.7 |
CC(1/2) | 0.991 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M HEPES, pH 7, 30% PEG6000 |