6UB5
Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from Lentinula edodes (LeGH128_IV) in complex with laminaritriose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-12 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.033120 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.806, 47.710, 52.517 |
Unit cell angles | 90.00, 110.81, 90.00 |
Refinement procedure
Resolution | 49.090 - 1.300 |
R-factor | 0.1692 |
Rwork | 0.169 |
R-free | 0.18150 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 1.250 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.090 | 1.380 |
High resolution limit [Å] | 1.300 | 1.300 |
Number of reflections | 52180 | 8384 |
<I/σ(I)> | 7.42 | |
Completeness [%] | 99.8 | |
Redundancy | 5.85 | |
CC(1/2) | 0.995 | 0.569 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 291 | lithium sulfate 1.4 M 2% PEG400 Tris 0.1 M |