6U6M
Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH840.1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-20 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.110, 75.080, 93.110 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.566 - 2.683 |
R-factor | 0.2249 |
Rwork | 0.220 |
R-free | 0.26950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c6x |
RMSD bond length | 0.002 |
RMSD bond angle | 0.503 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.570 | 2.779 |
High resolution limit [Å] | 2.683 | 2.683 |
Rmerge | 0.179 | 0.684 |
Rmeas | 0.199 | 0.780 |
Rpim | 0.085 | 0.368 |
Number of reflections | 12547 | 1171 |
<I/σ(I)> | 12.01 | 3.56 |
Completeness [%] | 93.0 | 87.98 |
Redundancy | 4.4 | 3.6 |
CC(1/2) | 0.990 | 0.795 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 293 | 0.2 M Sodium chloride, 0.1 M Phosphate/citrate, 20 % w/v PEG 8000 |