6TGU
Crystal structure of human protein kinase CK2alpha'(CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor Cl-OH-3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-29 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.8000 |
Spacegroup name | P 1 |
Unit cell lengths | 46.288, 47.532, 50.403 |
Unit cell angles | 66.80, 90.28, 89.59 |
Refinement procedure
Resolution | 46.285 - 0.833 |
R-factor | 0.144 |
Rwork | 0.144 |
R-free | 0.16690 |
Structure solution method | AB INITIO PHASING |
RMSD bond length | 0.017 |
RMSD bond angle | 1.499 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | Arcimboldo |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.285 | 0.884 |
High resolution limit [Å] | 0.833 | 0.833 |
Rmerge | 0.034 | 1.128 |
Rmeas | 0.036 | 1.223 |
Rpim | 0.014 | 0.469 |
Number of reflections | 309020 | 14819 |
<I/σ(I)> | 21 | 1.4 |
Completeness [%] | 83.6 | 24.5 |
Redundancy | 6.7 | 6.7 |
CC(1/2) | 0.999 | 0.568 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | RESERVOIR COMPOSITION: 28 % (W/V) PEG6000, 0.9 M LICL, 0.1 M, TRIS/HCL, PH 8.5; CRYSTALLIZATION DROP COMPOSITION PRIOR TO EQUILIBRATION: 0.01 ML RESERVOIR SOLUTION PLUS 0.02 ML CK2ALPHA' (MUTANT CYS336SER)/INHIBITOR MB002 MIXTURE (0.180 ML 6 MG/ML CK2ALPHA-'CYS336SER, 0.5 M NACL, 25 MM TRIS/HCL, PH 8.5, MIXED AND PRE-EQUILIBRATED WITH 0.02 ML 10 MM MB002 IN DIMETHYL SULFOXIDE); THE INHIBITOR MB002 WAS REPLACED BY EXTENSIVE SOAKING WITH THE 2-AMINOTHIAZOLE-TYPE INHIBITOR Cl-OH-3 |