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6TGU

Crystal structure of human protein kinase CK2alpha'(CSNK2A2 gene product) in complex with the 2-aminothiazole-type inhibitor Cl-OH-3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-29
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)0.8000
Spacegroup nameP 1
Unit cell lengths46.288, 47.532, 50.403
Unit cell angles66.80, 90.28, 89.59
Refinement procedure
Resolution46.285 - 0.833
R-factor0.144
Rwork0.144
R-free0.16690
Structure solution methodAB INITIO PHASING
RMSD bond length0.017
RMSD bond angle1.499
Data reduction softwareXDS
Data scaling softwareautoPROC
Phasing softwareArcimboldo
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2850.884
High resolution limit [Å]0.8330.833
Rmerge0.0341.128
Rmeas0.0361.223
Rpim0.0140.469
Number of reflections30902014819
<I/σ(I)>211.4
Completeness [%]83.624.5
Redundancy6.76.7
CC(1/2)0.9990.568
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5293RESERVOIR COMPOSITION: 28 % (W/V) PEG6000, 0.9 M LICL, 0.1 M, TRIS/HCL, PH 8.5; CRYSTALLIZATION DROP COMPOSITION PRIOR TO EQUILIBRATION: 0.01 ML RESERVOIR SOLUTION PLUS 0.02 ML CK2ALPHA' (MUTANT CYS336SER)/INHIBITOR MB002 MIXTURE (0.180 ML 6 MG/ML CK2ALPHA-'CYS336SER, 0.5 M NACL, 25 MM TRIS/HCL, PH 8.5, MIXED AND PRE-EQUILIBRATED WITH 0.02 ML 10 MM MB002 IN DIMETHYL SULFOXIDE); THE INHIBITOR MB002 WAS REPLACED BY EXTENSIVE SOAKING WITH THE 2-AMINOTHIAZOLE-TYPE INHIBITOR Cl-OH-3

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PDB entries from 2024-07-17

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