6TEI
Crystal structure of human protein kinase CK2alpha (CSNK2A1 gene product) in complex with the 2-aminothiazole-type inhibitor 17
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.920200 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 127.891, 127.891, 124.334 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.190 - 1.756 |
R-factor | 0.1822 |
Rwork | 0.182 |
R-free | 0.20440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hme |
RMSD bond length | 0.005 |
RMSD bond angle | 0.779 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.148 | 1.796 |
High resolution limit [Å] | 1.756 | 1.756 |
Rmerge | 0.077 | 1.822 |
Rmeas | 0.080 | 1.884 |
Rpim | 0.019 | 0.475 |
Number of reflections | 68306 | 3417 |
<I/σ(I)> | 21.2 | 1.8 |
Completeness [%] | 66.5 | 12.2 |
Redundancy | 17.4 | 15.5 |
CC(1/2) | 1.000 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | reservoir composition: 30 % (w/v) PEG8000, 0.2 M ammonium sulfate, 0.1 M sodium cacodylate, pH 6.5; crystallization drop composition before equilibration: 0.01 ml reservoir solution plus 0.02 ml enzyme stock solution (6 mg/ml enzyme, 0.5 M NaCl, 25 mM Tris/HCl, pH 8.5); the 2-aminothiazole-type inhibitor 17 was introduced by extensive soaking |