6T3E
Structure of Thermococcus litoralis Delta(1)-pyrroline-2-carboxylate reductase in complex with NADH and L-proline
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-04 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 82.688, 51.509, 92.290 |
Unit cell angles | 90.00, 115.91, 90.00 |
Refinement procedure
Resolution | 43.770 - 2.600 |
R-factor | 0.1913 |
Rwork | 0.189 |
R-free | 0.24200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1omo |
RMSD bond length | 0.007 |
RMSD bond angle | 0.909 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.800 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.200 | 0.800 |
Rpim | 0.120 | 0.440 |
Number of reflections | 20334 | 2015 |
<I/σ(I)> | 11.05 | 2.64 |
Completeness [%] | 94.3 | 95.8 |
Redundancy | 4.6 | 4.5 |
CC(1/2) | 0.930 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.8 | 293 | 0.2 M Potassium nitrate pH=6.8, 20% w/v Polyethylene glycol 3,350 |