6SF6
Crystal structure of the mAb 15A in complex with COMP-epitope P6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.174, 84.421, 151.885 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 84.000 - 1.900 |
R-factor | 0.1752 |
Rwork | 0.174 |
R-free | 0.20310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1iqw 2ipt |
RMSD bond length | 0.009 |
RMSD bond angle | 1.301 |
Data reduction software | xia2 |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0069) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.420 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.062 | 0.539 |
Rmeas | 0.071 | 0.617 |
Rpim | 0.034 | 0.292 |
Total number of observations | 318137 | |
Number of reflections | 80712 | 4597 |
<I/σ(I)> | 12.6 | |
Completeness [%] | 98.9 | 99.3 |
Redundancy | 3.9 | 3.9 |
CC(1/2) | 0.998 | 0.731 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | 30% polyethylene glycol 8000, 0.2 M ammonium sulphate 10 mg/ml 15A Fab fragment + P6 peptide (molar ratio 1:1.2) in 20 mM Tris HCl pH 7.4, 50 mM NaCl |