6S6F
Crystal structure of 2-methylcitrate synthase (PrpC) from Pseudomonas aeruginosa in apo form.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.014, 83.195, 82.713 |
Unit cell angles | 90.00, 101.93, 90.00 |
Refinement procedure
Resolution | 57.990 - 1.530 |
R-factor | 0.1962 |
Rwork | 0.196 |
R-free | 0.21260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tqg |
RMSD bond length | 0.016 |
RMSD bond angle | 1.468 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.990 | 57.990 | 1.570 |
High resolution limit [Å] | 1.530 | 6.840 | 1.530 |
Rmerge | 0.056 | 0.045 | 0.936 |
Rmeas | 0.067 | 0.054 | 1.128 |
Rpim | 0.036 | 0.029 | 0.622 |
Number of reflections | 101668 | 1196 | 7484 |
<I/σ(I)> | 8.9 | 1.2 | |
Completeness [%] | 99.9 | 99.9 | 99.8 |
Redundancy | 3.2 | 3.2 | 3.1 |
CC(1/2) | 0.998 | 0.994 | 0.562 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 100 mM Bis-Tris pH 5.5, 15-25% PEG3350, 40 mM D-Xylose |