6S15
Pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-24 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 41.250, 41.250, 68.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.350 - 1.700 |
R-factor | 0.2684 |
Rwork | 0.266 |
R-free | 0.29350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cdb |
RMSD bond length | 0.010 |
RMSD bond angle | 1.836 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.350 | 1.740 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.078 | 0.320 |
Rmeas | 0.081 | 0.330 |
Number of reflections | 6173 | 418 |
<I/σ(I)> | 21.74 | 3.54 |
Completeness [%] | 99.1 | 96.35 |
Redundancy | 22.9 | 20 |
CC(1/2) | 0.990 | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 296 | Potassium Cacodylate, Lithium Sulfate, Magnesium Sulfate, Iso-propanol |