6RTY
Crystal structure of the Patched ectodomain in complex with nanobody NB64
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.718, 65.873, 150.538 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.100 |
R-factor | 0.21771 |
Rwork | 0.216 |
R-free | 0.25498 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.453 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | SHELXD |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 150.540 | 2.140 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.066 | |
Rpim | 0.027 | 0.696 |
Number of reflections | 27821 | 1068 |
<I/σ(I)> | 16.2 | 1.7 |
Completeness [%] | 97.5 | 75.5 |
Redundancy | 11.8 | 7.8 |
CC(1/2) | 0.998 | 0.521 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES/imidazole pH 6.5, 0.02M of each amino acid (L-glutamate, alanine, glycine, lysine, serine), 12.5% (v/v) MPD, 12.5% (w/v) PEG 1000, 12.5% (w/v) PEG 3350 |