6RTE
Dihydro-heme d1 dehydrogenase NirN in complex with DHE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-17 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000040 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 191.123, 54.957, 131.896 |
Unit cell angles | 90.00, 132.42, 90.00 |
Refinement procedure
Resolution | 51.210 - 1.940 |
R-factor | 0.169 |
Rwork | 0.167 |
R-free | 0.19780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nir |
RMSD bond length | 0.006 |
RMSD bond angle | 0.773 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | BALBES |
Refinement software | PHENIX (dev_3112) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.210 | 2.010 |
High resolution limit [Å] | 1.940 | 1.940 |
Rmerge | 0.158 | 2.117 |
Rpim | 0.051 | 0.667 |
Number of reflections | 75298 | 7445 |
<I/σ(I)> | 11.1 | 1.5 |
Completeness [%] | 99.9 | 99.93 |
Redundancy | 10.6 | 10.7 |
CC(1/2) | 0.998 | 0.563 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 11.25%(w/v) PEG8000 5.22%(w/v) PGA 200-400 0.1M Tris/HCl pH 7.8 |