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6RTE

Dihydro-heme d1 dehydrogenase NirN in complex with DHE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-17
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.000040
Spacegroup nameC 1 2 1
Unit cell lengths191.123, 54.957, 131.896
Unit cell angles90.00, 132.42, 90.00
Refinement procedure
Resolution51.210 - 1.940
R-factor0.169
Rwork0.167
R-free0.19780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1nir
RMSD bond length0.006
RMSD bond angle0.773
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareBALBES
Refinement softwarePHENIX (dev_3112)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]51.2102.010
High resolution limit [Å]1.9401.940
Rmerge0.1582.117
Rpim0.0510.667
Number of reflections752987445
<I/σ(I)>11.11.5
Completeness [%]99.999.93
Redundancy10.610.7
CC(1/2)0.9980.563
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29311.25%(w/v) PEG8000 5.22%(w/v) PGA 200-400 0.1M Tris/HCl pH 7.8

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