6RT7
The YTH domain of YTHDC1 protein in complex with Gm6ACU oligonucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-02 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00002 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.850, 103.460, 42.007 |
Unit cell angles | 90.00, 104.89, 90.00 |
Refinement procedure
Resolution | 40.596 - 1.730 |
R-factor | 0.2232 |
Rwork | 0.220 |
R-free | 0.27060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4r3h |
RMSD bond length | 0.006 |
RMSD bond angle | 0.821 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.610 | 1.830 |
High resolution limit [Å] | 1.730 | 1.730 |
Rmeas | 0.090 | 1.114 |
Number of reflections | 33768 | 5348 |
<I/σ(I)> | 9.19 | |
Completeness [%] | 98.2 | 97 |
Redundancy | 3.38 | 3.31 |
CC(1/2) | 0.997 | 0.566 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M Bis-Tris at pH 6.5, 0.2 M ammonium sulfate and 25% PEG 3350 |