6R7W
Tannerella forsythia mature mirolysin in complex with a cleaved peptide.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-21 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.610, 66.490, 96.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.700 - 1.500 |
R-factor | 0.144 |
Rwork | 0.144 |
R-free | 0.15800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r7v |
RMSD bond length | 0.010 |
RMSD bond angle | 1.020 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.700 | 1.590 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.038 | |
Rmeas | 0.040 | |
Number of reflections | 41508 | 6056 |
<I/σ(I)> | 41.3 | |
Completeness [%] | 97.6 | |
Redundancy | 12.5 | |
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | Crystals of the mirolysin product complex were obtained at an OD280 of 19.7 in 5 mM Tris-HCl pH 8.0, 50 mM sodium chloride, 5 mM calcium chloride at 4 degrees from drops containing 200 nL of protein solution and 100 nL of reservoir solution, which comprised 40% ethanol, 5% PEG 1000, 0.1 M phosphate-citrate buffer, pH 4.2. |