6QRA
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-01-14 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.9762 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 74.134, 79.218, 85.635 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 37.667 - 1.710 |
| R-factor | 0.1852 |
| Rwork | 0.184 |
| R-free | 0.21330 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6nvr |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.036 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 85.640 | 85.640 | 1.800 |
| High resolution limit [Å] | 1.710 | 5.390 | 1.710 |
| Rmerge | 0.067 | 0.051 | 0.828 |
| Rmeas | 0.072 | 0.055 | 0.878 |
| Rpim | 0.024 | 0.019 | 0.290 |
| Total number of observations | 487477 | ||
| Number of reflections | 55702 | 1941 | 8028 |
| <I/σ(I)> | 16.4 | ||
| Completeness [%] | 100.0 | 99.8 | 99.9 |
| Redundancy | 8.8 | 7.7 | 9 |
| CC(1/2) | 0.999 | 0.998 | 0.872 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.08M Sodium cacodylate pH 6.5 -7.0, 1-2 M Ammonium sulphate |
