6Q94
Crystal structure of human GDP-D-mannose 4,6-dehydratase (S156D) in complex with GDP-Man
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-05 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 101.620, 231.060, 383.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 115.530 - 2.800 |
R-factor | 0.1887 |
Rwork | 0.186 |
R-free | 0.23500 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.066 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 115.530 | 2.870 |
High resolution limit [Å] | 2.800 | 2.800 |
Number of reflections | 111281 | |
<I/σ(I)> | 9.4 | |
Completeness [%] | 100.0 | |
Redundancy | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 25% PEG3350, 0.2M ammonium acetate, 0.1M bis-tris pH 5.5 |