6Q7V
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-18 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 109.380, 119.310, 114.408 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.654 - 2.560 |
R-factor | 0.2162 |
Rwork | 0.215 |
R-free | 0.24390 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4jvc |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.14rc1_3177) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.650 | 46.650 | 1.870 |
High resolution limit [Å] | 1.830 | 8.960 | 1.830 |
Rmerge | 0.240 | 0.022 | 1.369 |
Rmeas | 0.252 | 0.023 | 1.919 |
Rpim | 0.073 | 0.006 | 1.343 |
Total number of observations | 641266 | ||
Number of reflections | 56181 | 638 | 941 |
<I/σ(I)> | 6.1 | ||
Completeness [%] | 84.5 | 99.4 | 23.2 |
Redundancy | 11.4 | 12.5 | 1.2 |
CC(1/2) | 0.999 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 293 | 0.1 M MES (pH 5.7), 0.1 M NaH2PO4, 0.1 M K2HPO4, 2.4 M NaCl |