6PTE
Crystal Structure of ILNAMITKI peptide bound to HLA-A2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 |
Unit cell lengths | 58.429, 84.106, 85.363 |
Unit cell angles | 90.01, 90.06, 90.02 |
Refinement procedure
Resolution | 41.822 - 1.901 |
R-factor | 0.162 |
Rwork | 0.159 |
R-free | 0.18550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tvh |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.822 | 1.970 |
High resolution limit [Å] | 1.901 | 1.901 |
Rmerge | 0.096 | 0.290 |
Rmeas | 0.114 | 0.350 |
Rpim | 0.062 | 0.193 |
Number of reflections | 123624 | 11774 |
<I/σ(I)> | 10.8 | 4.33 |
Completeness [%] | 96.7 | 92.6 |
Redundancy | 3.2 | 2.9 |
CC(1/2) | 0.993 | 0.902 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 296 | 20% v/v PEG3350, 100 mM HEPES, pH 7.5 |