6PK6
Human PRPF4B bound to benzothiophene inhibitor 329
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-23 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | P 41 |
Unit cell lengths | 69.132, 69.132, 104.533 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.130 - 2.100 |
R-factor | 0.1904 |
Rwork | 0.189 |
R-free | 0.21650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ijp |
RMSD bond length | 0.003 |
RMSD bond angle | 1.210 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.530 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.136 | 1.782 |
Rmeas | 0.141 | 1.851 |
Rpim | 0.038 | 0.497 |
Total number of observations | 393055 | 32588 |
Number of reflections | 28701 | 2373 |
<I/σ(I)> | 14.1 | 1.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.7 | 13.7 |
CC(1/2) | 0.999 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M CAPSO pH 9.5, 20% PEG 8,000 |