6PJ3
Crystal structure of the Klebsiella pneumoniae LpxH/JH-LPH-33 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-14 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 105.800, 105.800, 53.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.810 - 2.250 |
R-factor | 0.1797 |
Rwork | 0.178 |
R-free | 0.21490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k8k |
RMSD bond length | 0.002 |
RMSD bond angle | 0.447 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.810 | 2.330 |
High resolution limit [Å] | 2.250 | 2.250 |
Number of reflections | 16571 | 1620 |
<I/σ(I)> | 15.19 | |
Completeness [%] | 99.7 | |
Redundancy | 8.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10 mM MES, pH 6.0, 100 mM NaCl, 0.5 mM DTT, 2.5% glycerol, 0.75% DMSO,25 mM sodium chloride, 10 mM magnesium chloride hexahydrate, 50 mM sodium citrate, pH 6.0, 11% PEG 400 |