6PH9
Crystal Structure of the Klebsiella pneumoniae LpxH-lipid X complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 105.990, 105.990, 52.570 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.895 - 1.920 |
R-factor | 0.1793 |
Rwork | 0.178 |
R-free | 0.19940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k8k |
RMSD bond length | 0.002 |
RMSD bond angle | 0.538 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.895 | 1.989 |
High resolution limit [Å] | 1.920 | 1.920 |
Number of reflections | 26262 | 2588 |
<I/σ(I)> | 33.03 | |
Completeness [%] | 99.9 | |
Redundancy | 19.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 4 mg/mL protein, 10 mM MES, pH 6.0, 100 mM NaCl, 0.5 mM DTT, 2.5% glycerol, 100mM calcium chloride dihydrate, 50mM HEPES, pH 7.0, 16.5% PEG 400 |