6PGW
Crystal structure of zebrafish Protocadherin-19 EC3-6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-31 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97910 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.920, 58.896, 70.956 |
Unit cell angles | 90.00, 117.97, 90.00 |
Refinement procedure
Resolution | 50.000 - 3.000 |
R-factor | 0.21939 |
Rwork | 0.215 |
R-free | 0.29815 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iu9 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.474 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.078 | 0.229 |
Rmeas | 0.102 | 0.304 |
Rpim | 0.066 | 0.198 |
Number of reflections | 10543 | 411 |
<I/σ(I)> | 9.2 | 3.2 |
Completeness [%] | 86.2 | 80.3 |
Redundancy | 2 | 2 |
CC(1/2) | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 277 | 100 mM HEPES, 55% MPD |