6P3Q
Calpain-5 (CAPN5) Protease Core (PC)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-07-16 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 84.038, 51.576, 110.635 |
Unit cell angles | 90.00, 110.42, 90.00 |
Refinement procedure
Resolution | 51.840 - 2.800 |
R-factor | 0.2295 |
Rwork | 0.227 |
R-free | 0.28510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | SAXS guided homology model |
RMSD bond length | 0.010 |
RMSD bond angle | 1.120 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.840 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmeas | 0.087 | 0.623 |
Number of reflections | 22239 | 2233 |
<I/σ(I)> | 10.8 | 1.73 |
Completeness [%] | 99.4 | 99.07 |
Redundancy | 2 | 2 |
CC(1/2) | 0.996 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | 250 mM sodium phosphate, 12 % PEG 8000, 36 mM EDTA, 10 mM Calcium chloride, 0.4 mM H-E(EDANS)-KIEIVRKKPIFKKATV-K(DASBCYL)-OH |