6OYE
Crystal structure of Y99F mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-12 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.092, 68.113, 86.737 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.160 - 1.530 |
R-factor | 0.147 |
Rwork | 0.146 |
R-free | 0.16810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.016 |
RMSD bond angle | 1.760 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.560 |
High resolution limit [Å] | 1.530 | 4.150 | 1.530 |
Rmerge | 0.035 | 0.018 | 0.300 |
Rmeas | 0.038 | 0.019 | 0.337 |
Rpim | 0.013 | 0.005 | 0.147 |
Total number of observations | 409681 | ||
Number of reflections | 60854 | 3332 | 2881 |
<I/σ(I)> | 14.6 | ||
Completeness [%] | 98.8 | 100 | 95 |
Redundancy | 6.7 | 13 | 4.3 |
CC(1/2) | 1.000 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3 % 2-propanol, 0.1 M Tris-HCl, pH 7.5 |