6OJD
A high-resolution crystal structure of covalent complex of NocB thioesterase domain with fluorophosphonate nocardicin G analog
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 113.15 |
Detector technology | PIXEL |
Collection date | 2018-10-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03323 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.680, 78.560, 146.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.553 - 1.990 |
R-factor | 0.1889 |
Rwork | 0.188 |
R-free | 0.22500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ojc |
RMSD bond length | 0.009 |
RMSD bond angle | 0.914 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.370 | 2.040 |
High resolution limit [Å] | 1.990 | 1.990 |
Rmerge | 0.081 | 0.626 |
Rmeas | 0.098 | 0.747 |
Rpim | 0.053 | 0.402 |
Number of reflections | 58017 | 4265 |
<I/σ(I)> | 9.8 | |
Completeness [%] | 98.3 | 98.5 |
Redundancy | 3.2 | 3.3 |
CC(1/2) | 0.996 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 293.15 | 50mM CHES pH 9.0, 250mM CaCl2, 30% PEG 4K |