6OCH
Crystal structure of VASH1-SVBP complex bound with parthenolide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-08-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.132, 90.162, 127.241 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.121 - 2.003 |
R-factor | 0.1817 |
Rwork | 0.180 |
R-free | 0.22930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ocf |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.150 | 0.060 | 2.046 |
Rmeas | 0.156 | 0.063 | 2.130 |
Rpim | 0.043 | 0.018 | 0.587 |
Number of reflections | 55055 | 2976 | 2700 |
<I/σ(I)> | 4.7 | ||
Completeness [%] | 99.9 | 99.7 | 100 |
Redundancy | 13 | 12.3 | 12.8 |
CC(1/2) | 0.998 | 0.545 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.2 M ammonium sulfate, 0.1 M Bis-tris, pH 5.5, and 25 % (w/v) PEG 3350 |