6O3Z
Crystal structure of RORgt with 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide (compound 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 77 |
Detector technology | CCD |
Collection date | 2014-08-24 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 61.136, 61.136, 155.790 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.787 - 2.400 |
R-factor | 0.1904 |
Rwork | 0.187 |
R-free | 0.24650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.849 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev-2328_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.174 | 0.827 |
Rmeas | 0.217 | |
Rpim | 0.097 | 0.476 |
Number of reflections | 11432 | 1208 |
<I/σ(I)> | 9.2 | 2.1 |
Completeness [%] | 95.1 | 98.4 |
Redundancy | 4.9 | 4.8 |
CC(1/2) | 0.984 | 0.578 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 20% PEG3350, 100 mM sodium citrate |