6NXL
Ubiquitin binding variants
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 41 |
Unit cell lengths | 62.359, 62.359, 168.121 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.596 - 2.803 |
R-factor | 0.216 |
Rwork | 0.213 |
R-free | 0.26540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4s1z |
RMSD bond length | 0.009 |
RMSD bond angle | 1.083 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.850 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.084 | 0.237 |
Rmeas | 0.099 | 0.293 |
Rpim | 0.051 | 0.169 |
Number of reflections | 15140 | 529 |
<I/σ(I)> | 14.8 | 2 |
Completeness [%] | 96.1 | 67 |
Redundancy | 3.5 | 2.1 |
CC(1/2) | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 0.1M Sodium Acetate pH 4.6, 0.02 M Calcium Chloride, 30% MPD, 0.1M Potassium Sodium Tartrate Tetrahydrate and 56mg/mL protein co-sized Ubv and APC2 WHB (735-C) |