6NTJ
Neutron/X-ray crystal structure of AAC-VIa bound to gentamicin C1A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 2018-01-01 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 89.319, 86.228, 51.003 |
Unit cell angles | 90.00, 120.40, 90.00 |
Refinement procedure
Resolution | 16.800 - 2.350 |
R-factor | 0.2671 |
Rwork | 0.265 |
R-free | 0.30920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bbz |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.970 |
High resolution limit [Å] | 1.900 | 4.090 | 1.900 |
Rmerge | 0.056 | 0.037 | 0.658 |
Rmeas | 0.068 | 0.045 | 0.822 |
Rpim | 0.039 | 0.025 | 0.484 |
Number of reflections | 26002 | 2657 | 2444 |
<I/σ(I)> | 18.8 | ||
Completeness [%] | 98.4 | 98.4 | 93.3 |
Redundancy | 2.8 | 3 | 2.6 |
CC(1/2) | 0.996 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | polyethylene glycol (PEG) 8000, 0.2 M MgCl2, 0.1 M Tris, pH 8.5 |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | polyethylene glycol (PEG) 8000, 0.2 M MgCl2, 0.1 M Tris, pH 8.5 |