6NOJ
PD-L1 IgV domain V76T with fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-29 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 83.803, 96.941, 32.658 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.084 - 2.330 |
R-factor | 0.1956 |
Rwork | 0.190 |
R-free | 0.24540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bik |
RMSD bond length | 0.011 |
RMSD bond angle | 1.259 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.390 |
High resolution limit [Å] | 2.330 | 2.330 |
Rmerge | 0.099 | 0.505 |
Rmeas | 0.159 | 0.539 |
Rpim | 0.051 | 0.183 |
Number of reflections | 16612 | 803 |
<I/σ(I)> | 11.3 | |
Completeness [%] | 99.5 | 99.9 |
Redundancy | 8.8 | 7.9 |
CC(1/2) | 0.675 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 291 | 0.056 M sodium phosphate monobasic, 1.344 M potassium phosphate dibasic |