6NNJ
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to CH31 scFv in Complex with Crystallization Chaperones 3H109L Fab and 35O22 scFv at 3.1 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-17 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 63 |
Unit cell lengths | 132.150, 132.150, 315.950 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.256 - 2.600 |
R-factor | 0.25 |
Rwork | 0.248 |
R-free | 0.29260 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.090 | 0.042 | 2.523 |
Rmeas | 0.098 | 0.046 | 2.760 |
Rpim | 0.039 | 0.018 | 1.119 |
Total number of observations | 316746 | ||
Number of reflections | 51287 | 4452 | 22 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 58.0 | 99.2 | 0.5 |
Redundancy | 6.2 | 6.3 | 5.8 |
CC(1/2) | 0.998 | 0.349 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 298 | 90 mM imidazole pH 6.5, 90 mM MgCl2, 0.6 M NaCl and 6% PEG 3,350 |