6NKL
2.2 A resolution structure of VapBC-1 from nontypeable Haemophilus influenzae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.880, 57.325, 175.745 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.010 - 2.200 |
R-factor | 0.1885 |
Rwork | 0.186 |
R-free | 0.23380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ecd |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.010 | 48.010 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.168 | 0.064 | 1.613 |
Number of reflections | 23388 | 407 | 1966 |
<I/σ(I)> | 10.9 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 13 | 10.7 | 13.7 |
CC(1/2) | 0.998 | 0.996 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 20% (w/v) PEG 4000, 0.1 M sodium acetate, 0.2 M ammonium acetate |