6NJH
Crystal Structure of the PDE4D Catalytic Domain and UCR2 Regulatory Helix with T-48
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-08-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9786 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.640, 82.070, 116.530 |
Unit cell angles | 90.00, 110.23, 90.00 |
Refinement procedure
Resolution | 19.910 - 2.150 |
R-factor | 0.174 |
Rwork | 0.172 |
R-free | 0.21000 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 1.552 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.210 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.085 | 0.504 |
Number of reflections | 76922 | 5715 |
<I/σ(I)> | 11.59 | 2.6 |
Completeness [%] | 97.6 | 98.4 |
Redundancy | 3.2 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 4.6MG/ML VCID7620 + 0.5MM T-048-1 1MM DTT, 0.1MM ZNCL2, 0.1MM MGCL2 (BATCH 1214013) AGAINST SPARSE MATRIX CONDITION MORPHEUS C4, 12.5% W/V PEG1,000 , 12.5% W/V PEG3,350 , 12.5% W/V MPD , 0.03M NPS (SODIUM NITRATE, DISODIUM HYDROGEN PHOSPHATE, AMMONIUM SULFATE), 0.1M MES/IMIDAZOLE PH 6.5, CRYO-PROTECTED - DIRECT (QYM9-2), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K |