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6N1C

Crystal structure of Inorganic pyrophosphatase from Legionella pneumophila Philadelphia 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2018-05-11
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths64.080, 119.940, 74.900
Unit cell angles90.00, 109.59, 90.00
Refinement procedure
Resolution40.967 - 2.000
R-factor0.1945
Rwork0.193
R-free0.23210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xel as per Morda
RMSD bond length0.007
RMSD bond angle0.880
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX ((dev_3304))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.96740.9672.050
High resolution limit [Å]2.0008.9402.000
Rmerge0.0480.0240.623
Rmeas0.0530.0260.713
Number of reflections716738255277
<I/σ(I)>19.3160.12.25
Completeness [%]99.597.699.9
Redundancy6.0186.2913.994
CC(1/2)0.9990.9990.785
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5285Molecular dimensions Morpheus screen, H12: 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD: 20mM of each sodium L-glutamate, DL-alanine, glycine, DL-lysine HCl, DL-serine: 100mM Bicine/Trizma base pH 8.5: LepnA.00023.a.B1.PS38421 at 21.3mg/ml: cryo: direct: tray 299905h12: puck hgu1-7

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