6MGP
Structure of human 4-1BB / 4-1BBL complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9774 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 102.013, 229.378, 114.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.907 - 2.130 |
R-factor | 0.2181 |
Rwork | 0.217 |
R-free | 0.24990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2x29 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.910 | 2.170 |
High resolution limit [Å] | 2.130 | 2.130 |
Rmerge | 0.205 | 10.329 |
Rmeas | 0.209 | 10.518 |
Rpim | 0.040 | 1.977 |
Total number of observations | 2039905 | |
Number of reflections | 75083 | 4362 |
<I/σ(I)> | 17.1 | |
Completeness [%] | 99.6 | 99 |
Redundancy | 27.2 | 27.7 |
CC(1/2) | 0.999 | 0.287 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 295 | 2.5M sodium acetate pH 7.0 plus 0.1% w/v Ovalbumin, 0.0005% w/v Pepsin, 0.0005% w/v Proteinase K, 0.0005% w/v Trypsin, 0.002 M HEPES sodium pH 6.8 |