6MGF
untagged, wild-type LptB in complex with ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.742, 34.767, 62.897 |
Unit cell angles | 90.00, 100.07, 90.00 |
Refinement procedure
Resolution | 61.928 - 2.982 |
R-factor | 0.2048 |
Rwork | 0.201 |
R-free | 0.23670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b8b |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 61.930 | 61.930 | 3.160 |
High resolution limit [Å] | 2.980 | 8.950 | 2.980 |
Rmerge | 0.294 | 0.072 | 1.093 |
Rmeas | 0.326 | 0.081 | 1.231 |
Rpim | 0.137 | 0.036 | 0.553 |
Total number of observations | 23772 | ||
Number of reflections | 4568 | 190 | 672 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 98.2 | 99.7 | 89.4 |
Redundancy | 5.2 | 4.8 | 4.4 |
CC(1/2) | 0.967 | 0.994 | 0.591 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 6.5 | 296 | 22% w/v PEG 4000, 100mM MES pH 6.5, 1.3mM novobiocin-adamantyl, 7% DMSO |