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6MG5

Structure of full-length human lambda-6A light chain JTO in complex with coumarin 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]80
Detector technologyPIXEL
Collection date2018-04-06
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0332
Spacegroup nameP 21 21 21
Unit cell lengths64.070, 84.219, 96.171
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.090 - 1.800
R-factor0.207
Rwork0.204
R-free0.26300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.401
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.1001.850
High resolution limit [Å]1.8001.800
Rpim0.0510.760
Number of reflections478423416
<I/σ(I)>9.51
Completeness [%]98.095.9
Redundancy5.25
CC(1/2)1.0000.460
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP296Crystals of JTO-FL were grown via sitting-drop vapor diffusion using a crystallization buffer consisting of 20% PEG 3350 and 0.2 M NH4H2PO4 at 23 degrees C. Both diamond-shaped and plate-shaped crystals were generated in the same drop using these conditions, but only the plate-shaped crystals produced usable diffraction data. To generate JTO-FL:ligand complexes, crystals of apo JTO-FL were soaked with a tenfold molar excess of ligand for 10 days. Crystals were harvested and immediately flash cooled in liquid nitrogen.

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PDB entries from 2024-05-15

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