6MED
Crystal structure of broadly neutralizing antibody HEPC3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.2 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 98.910, 108.690, 166.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.583 - 2.040 |
R-factor | 0.1832 |
Rwork | 0.181 |
R-free | 0.21630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mwf |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 85.000 | 85.000 | 2.070 |
High resolution limit [Å] | 2.040 | 11.170 | 2.040 |
Rmerge | 0.102 | 0.030 | 1.050 |
Rmeas | 0.115 | 0.034 | 1.194 |
Rpim | 0.054 | 0.016 | 0.559 |
Total number of observations | 502647 | 2994 | 24275 |
Number of reflections | 114454 | 755 | 5600 |
<I/σ(I)> | 9.2 | 21.3 | 1.4 |
Completeness [%] | 100.0 | 95.8 | 99.9 |
Redundancy | 4.4 | 4 | 4.3 |
CC(1/2) | 0.997 | 0.999 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.3 | 298 | 2.0M ammonium sulfate, 0.3M sodium chloride, and 0.1M sodium cacodylate pH 6.3 |