Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MDE

Mevalonate kinase from Methanosarcina mazei with mevalonate bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9792
Spacegroup nameP 21 21 21
Unit cell lengths54.050, 59.330, 191.100
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.662 - 2.100
R-factor0.1982
Rwork0.196
R-free0.24960
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4hac
RMSD bond length0.008
RMSD bond angle0.883
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]56.6622.180
High resolution limit [Å]2.1002.100
Rmerge0.111
Number of reflections36591
<I/σ(I)>9.972.1
Completeness [%]99.199.39
Redundancy3.53.5
CC(1/2)0.9990.866
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5298100 mM Bis-Tris, pH 5.5, 200-300 mM sodium potassium tartrate, 15-25% PEG8000

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon