6MC1
Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((9-(methylthio)-5,6-dihydrothieno[3,4-h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-07-15 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.110, 129.390, 83.310 |
Unit cell angles | 90.00, 91.81, 90.00 |
Refinement procedure
Resolution | 48.707 - 2.700 |
R-factor | 0.1901 |
Rwork | 0.188 |
R-free | 0.22720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zzw |
RMSD bond length | 0.005 |
RMSD bond angle | 0.863 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.707 | 48.707 | 2.770 |
High resolution limit [Å] | 2.700 | 12.070 | 2.700 |
Rmerge | 0.201 | 0.038 | 1.284 |
Rmeas | 0.235 | 0.045 | 1.499 |
Number of reflections | 38356 | 443 | 2831 |
<I/σ(I)> | 7.91 | 23.25 | 1.49 |
Completeness [%] | 99.7 | 98 | 99.8 |
Redundancy | 3.707 | 3.384 | 3.745 |
CC(1/2) | 0.982 | 0.998 | 0.523 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 25% PEG 3350, 200 mM ammonium acetate, 100 mM HEPES |