Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6M4Y

Structure of a R371A mutant of a Group II PLP dependent decarboxylase from Methanocaldococcus jannaschii

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsBRUKER AXS MICROSTAR
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-08-20
DetectorMARRESEARCH
Wavelength(s)1.5418
Spacegroup nameP 43 21 2
Unit cell lengths98.440, 98.440, 121.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.270 - 2.100
R-factor0.1653
Rwork0.164
R-free0.20010
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6jy1
RMSD bond length0.010
RMSD bond angle0.999
Data reduction softwareiMOSFLM (v7.1)
Data scaling softwareAimless (0.7.1)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17_3644)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.2702.160
High resolution limit [Å]2.1002.100
Rmerge0.2081.202
Rmeas0.2121.226
Rpim0.0410.240
Number of reflections356182856
<I/σ(I)>16.7
Completeness [%]100.0100
Redundancy26.525.9
CC(1/2)0.9980.851
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1M sodium citrate pH 5.4, 0.2M sodium potassium tartarate, 2.0M ammonium sulphate

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon