6M47
X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in tramadol bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 97.004, 140.956, 167.795 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.502 - 3.252 |
R-factor | 0.2427 |
Rwork | 0.241 |
R-free | 0.27530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xnx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.502 | 48.500 | 3.400 |
High resolution limit [Å] | 3.250 | 11.260 | 3.250 |
Rmerge | 0.165 | 0.023 | 1.390 |
Rmeas | 0.180 | 0.026 | 1.502 |
Rpim | 0.071 | 0.011 | 0.563 |
Total number of observations | 5922 | 29933 | |
Number of reflections | 35898 | 953 | 4322 |
<I/σ(I)> | 10.4 | 47.1 | 1.5 |
Completeness [%] | 97.7 | 95.8 | 98 |
Redundancy | 6.6 | 6.2 | 6.9 |
CC(1/2) | 0.998 | 0.999 | 0.598 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 0.1M MOPS, pH 7.0, 30% PEG600 |